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Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions

Nature Protocols 12, 899 (2017). doi:10.1038/nprot.2017.012

Authors: Xingwang Li, Oscar Junhong Luo, Ping Wang, Meizhen Zheng, Danjuan Wang, Emaly Piecuch, Jacqueline Jufen Zhu, Simon Zhongyuan Tian, Zhonghui Tang, Guoliang Li & Yijun Ruan

Chromatin interaction analysis by paired-end tag sequencing (ChIA-PET) is a robust method for capturing genome-wide chromatin interactions. Unlike other 3C-based methods, it includes a chromatin immunoprecipitation (ChIP) step that enriches for interactions mediated by specific target proteins. This unique feature allows ChIA-PET to provide the

Authors:   Xingwang Li; Oscar Junhong Luo; Ping Wang; Meizhen Zheng; Danjuan Wang; Emaly Piecuch; Jacqueline Jufen Zhu; Simon Zhongyuan Tian; Zhonghui Tang; Guoliang Li; Yijun Ruan
Journal:   Nature Protocols
Volume:   12
edition:   5
Year:   2017
Pages:   899
DOI:   10.1038/nprot.2017.012
Publication date:   01-May-2017
Facts, background information, dossiers
  • chromatin
  • chia
  • target proteins
  • sequencing
  • interactions
  • interaction analysis
  • chromatin immunopre…
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