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ICM-Browser



ICM-Browser

A screenshot of ICM-Browser, showing a small molecule being docked.
Developer Molsoft LLC
Latest release 3.5-0 / February 21, 2007
OS Windows XP/NT/2000, Linux/i386/AMD64, SGI IRIX, Mac OS X
Genre Molecular modelling
Website ICM-Browser at molsoft.com

ICM-Browser is a free product of Molsoft, and provides access to structural biology data and protein families. It reads PDB or alignment files directly from online databases and provides a molecular graphics environment with various representations of proteins, DNA and RNA, and multiple sequence alignments.

Additional recommended knowledge

Contents

Supported file formats

  • PDB structure files
  • MDL molecular format
  • Tripos mol2 format
  • Tables/spreadsheets in portable *.csv or icm format
  • Sequence and alignment files (fasta, swissprot, and other formats)
  • Wavefront 3D objects
  • ICM objects and ICM binary archives with multiple objects or molecular movies

Selected features

  • PDB search engine with direct local access to all PDB files without downloading the database
  • a molecular graphics tool box including multiple representations, fog effects, stereo, adjustable perspective, and multilevel selection
  • colored alignments of publication quality, consensus coloring
  • cross-selection between 3D objects, sequences and alignments
  • selections at the secondary structure level

References

  • R. Abagyan, W. H. Lee, E. Raush, L. Budagyan, M. Totrov, M. Sundstrom and B. D. Marsden, Disseminating structural genomics data to the public: from a data dump to an animated story, Trends in Biochemical Sciences, 31, 76-78, 2006. doi:10.1016/j.tibs.2005.12.006


See also

 
This article is licensed under the GNU Free Documentation License. It uses material from the Wikipedia article "ICM-Browser". A list of authors is available in Wikipedia.
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