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QIAGEN Genomics Enters Into Tuberculosis SNP Genotyping Research And License Agreement with TIGR and MMC
Groups Collaborate to Analyze Genetic Variation in Different Strains of M. Tuberculosis
03-16-2001: QIAGEN
Genomics, Inc., a wholly-owned subsidiary of QIAGEN N.V.
(Nasdaq: QGENF; Frankfurt/Neuer Market: QIA: Easdaq:
QGEN) today announced that it has entered into a
research and license agreement with The Institute for
Genomic Research (TIGR) and the Montefiore Medical
Center (MMC) regarding an association study of single
nucleotide polymorphisms (SNPs) in Mycobaterium
tuberculosis (M. tuberculosis).
M. tuberculosis is the bacterium that causes tuberculosis
(TB), which is responsible for more than three million
deaths per year. According to the public health reports,
more than eight million new cases of TB are diagnosed
each year, and almost two billion people are latently
infected with the bacterium.
QIAGEN Genomics and TIGR performed two studies on
the use of QIAGEN Genomics' Masscode ™ system to
quickly and accurately genotype M. tuberculosis SNPs. In
the initial pilot study, the Masscode system was used to
analyze 12 of approximately eleven hundred previously
identified M. tuberculosis SNPs, in a total of 24
reference-strain DNA samples furnished by TIGR (under
the direction of Rob Fleischmann, Ph.D., TIGR's principale
investigator for the project). The pilot study provided an
average call rate, defined as the total number of genotype
measurements that were obtained divided by the total
number of measurements possible, of 99.5%.
The groups then performed, in collaboration with MMC, an
analysis of the 12 SNPs plus an additional one hundred M.
tuberculosis SNPs against 2 reference-strain DNA
samples and 170 clinical isolates of M. tuberculosis. The
clinical isolates were part of an extensive genotyping study
being performed at MMC in New York. Results of the
second study demonstrated the application of the
Masscode system in genotyping loci of a highly infectious
microbe of public health importance.
"We were very pleased by the accurate, rapid and robust
results generated from use of the Masscode system in
these studies," said Dr. Claire Fraser, President of TIGR.
"We look forward to continuing to work with QIAGEN
Genomics and using the Masscode technology to identify
additional SNPs in Mycobacterium tuberculosis and other
pathogens."
According to David Alland, M.D., who, as Attending in
Infectious Disease at MMC and Associate Professor of
Medicine, Albert Einstein College of Medicine, served as
MMC's principal investigator on the project, "The analysis
of these SNPs and samples form the basis of future
studies that are expected to provide major insights into the
population structure and evolution of the M. tuberculosis
species."
The groups believe that by performing such genotyping
studies, a better understanding of disease processes may
be obtained. Results of such analyses are expected to help
guide vaccine and antibiotic development, as well as
provide potential markers for diagnostic and prognostic
kits. QIAGEN Genomics has been granted an exclusive
license from TIGR to make and sell kits or other products
based on certain M. tuberculosis SNP patents and know
how owned by TIGR. In addition, QIAGEN Genomics has
the right to use and to license others to use TIGR's M.
tuberculosis SNP patents in providing genotyping services
for others using the Masscode system.
The Masscode system is an elegant, cost effective and
robust method of SNP genotyping. It couples a unique
chemistry - the Masscode tags - with the most quantitative
instrument available to date, the single quadrupole mass
spectrometer.
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