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Langevin dynamics



Langevin dynamics is an approach to mechanics using simplified models and using stochastic differential equations to account for omitted degrees of freedom. A molecular system in the real world is unlikely to be present in vacuum. Jostling of solvent or air molecules causes friction, and the occasional high velocity collision will perturb the system. Langevin dynamics attempts to extend molecular dynamics to allow for these effects. Also, Langevin dynamics allow controlling the temperature like a thermostat, thus approximating the canonical ensemble.

Additional recommended knowledge

Langevin dynamics mimic the viscous aspect of a solvent. In itself, it is not a complete implicit solvent, i.e. it does not account for either the electrostatic screening nor the hydrophobic effect. For a system of N particles with masses M, coordinates X and velocities V, the continuous form of the simplest Langevin equation is [1]

F(X) = - \nabla U(X)- \gamma M\dot{X}+R(t)=M\dot{V} (t)

Where F(X) is the force felt by the particles, U(X) is the potential energy (e.g., the force field), γ is the collision parameter or damping constant (reciprocal time units).

R(t) is a random force vector, which is a stationary Gaussian process with zero-mean:

\left\langle R(t) \right\rangle =0
\left\langle R(t)R(t')^T \right\rangle =2 \gamma k_B T M \delta(t-t')

Where T is the target temperature, kB is Boltzmann's constant, and δ is the Dirac delta.

If the main objective is to control temperature, care should be exercised to use a small damping constant γ. As γ grows, it spans the inertial all the way to the diffusive (Brownian) regime. The Langevin dynamics limit of non-inertia is commonly described as Brownian dynamics.

Langevin differential equations which govern a random variable X can be reformulated as "Fokker-Planck" differential equations (Fokker-Planck Eq'n), or "master equations," which govern the probability distribution of X.


References

  1. ^ Schlick, Tamar (2002). Molecular Modeling and Simulation. Springer, 435-438. ISBN 0-387-95404-X. 

See also

External links

  • Langevin Dynamics (LD) Simulation
 
This article is licensed under the GNU Free Documentation License. It uses material from the Wikipedia article "Langevin_dynamics". A list of authors is available in Wikipedia.
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